PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 558aa    MW: 63634.1 Da    PI: 7.3665
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48048.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.71.6e-0770152790
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 A+++GF ++ks++k +   g+   +   C + gk +   k+  ++++++++++++++C  k+k+    +g++ v+     HnH ++
  Dca48048.1  70 AHSLGFGLCKSSNKPR---GTREYHLIECDRGGKYKGPFKDplKVQKKKKTTSKKIECPFKIKIVSGANGEFAVKPTYGFHNHVFM 152
                 899********98887...555688899*******9998888999**************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-570152IPR004330FAR1 DNA binding domain
PfamPF105513.1E-25254348IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MSFTDDDDYN DGDYEVDDGD YEVDDQSALG DDNISVDALL GDGIDYSIHF LNTLSFINVA  60
SVYTWAQLIA HSLGFGLCKS SNKPRGTREY HLIECDRGGK YKGPFKDPLK VQKKKKTTSK  120
KIECPFKIKI VSGANGEFAV KPTYGFHNHV FMKHFDGHRQ MTSFSDKQKD YVRVNVVSGI  180
KTANIRLGFK EKYPDQPQPN KRQFYSVVAK VRLEEMSGRT HIYFYDTNDV DETLSRVFMV  240
HPVAHNLFKA YHYVIGIDST YKTNSYDYAV VEIVGVTPVG KSFLIAWAMM SNEKTESYVS  300
VLEMLRQVLG PNVNPTAFVT DRELSLMAAL STIFPTISHS LCVWHINTAV ENKATKLFKD  360
DNWGQRYVEK KCRKLVNSPT EEAYRFNWNR LKGESNPLMV QFLSETWIPS DIRFVKCFTN  420
KVLHFGIATT SRVESAHDIK SPTSGPLSSE TLTLQSSVFF LPVFTTDDVL EEDETPLTDF  480
PPCPRFEGIL ITPSSISSST TSTHLHPPNY PFRRLRQHLP QHHLPPPPPQ YLHQNYGRTL  540
FDIAEHIRDL KTRPSCRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-12far-red elongated hypocotyls 3